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Publications 2016

  1. Chimusa ER, Mbiyavanga M, Mazandu GK, Mulder NJ, "ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations", Bioinformatics, 2016 Feb 15;32(4):549-56. doi: 0.1093/bioinformatics/btv619. Epub 2015 Oct 27. PMID: 26508762
  2. Mazandu GK, Chimusa ER, Mbiyavanga M, Mulder NJ, "A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool", Bioinformatics, 2016 Feb 1;32(3):477-9. doi: 10.1093/bioinformatics/btv590. Epub 2015 Oct 17.PMID: 26476781
  3. Mulder NJ, Adebiyi E, Alami R, Benkahla A, Brandful J, Doumbia S, Everett D, Fadlelmola FM, Gaboun F, Gaseitsiwe S, Ghazal H, Hazelhurst S, Hide W, Ibrahimi A, Jaufeerally Fakim Y, Jongeneel CV, Joubert F, Kassim S, Kayondo J, Kumuthini J, Lyantagaye S, Makani J, Mansour Alzohairy A, Masiga D, Moussa A, Nash O, Ouwe Missi Oukem-Boyer O, Owusu-Dabo E, Panji S, Patterton H, Radouani F, Sadki K, Seghrouchni F, Tastan Bishop Ö, Tiffin N, Ulenga N; H3ABioNet Consortium, "H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa", Genome Res, 2016 Feb;26(2):271-7. doi: 10.1101/gr.196295.115. Epub 2015 Dec 1.PMID: 26627985
  4. Mulder NJ, Christoffels A, de Oliveira T, Gamieldien J, Hazelhurst S, Joubert F, Kumuthini J, Pillay CS, Snoep JL, Tastan Bishop Ö, Tiffin N, "The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt", PLoS Comput Biol, 2016 Feb 4;12(2):e1004395. doi: 10.1371/journal.pcbi.1004395. eCollection 2016 Feb.PMID: 26845152
  5. Camilla T. Weyer, John D. Grewar, Phillippa Burger, Esthea Rossouw, Carina Lourens, Christopher Joone, Misha le Grange, Peter Coetzee, Estelle H. Venter, Darren P. Martin, N. James MacLachlan, and Alan J. Guthrie, Ahead of Print-"African Horse Sickness Caused by Genome Reassortment and Reversion to Virulence of Live, Attenuated Vaccine Viruses, South Africa", 2004–2014-Volume 22, Number 12—December 2016-Emerging Infectious Disease Journal-CDC
  6. Batsirai Mabvakure, Darren P. Martin, Simona Kraberger, Leendert Cloete, Sharon van Brunschote, Andrew D.W. Geering, John E. Thomas, Kaveh Bananej, Jean-Michel Lett, Pierre Lefeuvre, Arvind Varsani, Gordon W. Harkins, "Ongoing geographical spread of Tomato yellow leaf curl virus", Virology 498, 257-264
  7. Essowè Palanga, Denis Filloux, Darren P. Martin, Emmanuel Fernandez, Daniel Gargani, Romain Ferdinand, Jean Zabré, Zakaria Bouda, James Bouma Neya, Mahamadou Sawadogo, Oumar Traore, Michel Peterschmitt, Philippe Roumagnac, "Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso", PloS ONE 11 (10), e0165188
  8. Syed Shan‐E‐Ali Zaidi, Darren P Martin, Imran Amin, Muhammad Farooq, Shahid Mansoor, "Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses", Molecular Plant Pathology
  9. Alexandre De Bruyn, Mireille Harimalala, Innocent Zinga, Batsirai M Mabvakure, Murielle Hoareau, Virginie Ravigné, Matthew Walters, Bernard Reynaud, Arvind Varsani, Gordon W Harkins, Darren P Martin, Jean-Michel Lett, Pierre Lefeuvre, "Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar", BMC Evolutionary Biology 16 (1), 182
  10. Marta Giovanetti, Nuno Rodrigues Faria, Marcio Roberto Teixeira Nunes, Janaina Mota de Vasconcelos, José Lourenço, Sueli Guerreiro Rodrigues, Joao Lidio Vianez, Sandro Patroca da Silva, Poliana Silva Lemos, Fernando Neto Tavares, Darren Patrick Martin, Mateus Santana do Rosário, Isadora Cristina Siqueira, Massimo Ciccozzi, Oliver G Pybus, Tulio de Oliveira, Luiz Carlos Alcantara, "Zika virus complete genome from Salvador, Bahia, Brazil", Infection, Genetics and Evolution 41, 142-145
  11. Pauline Bernardo, Brejnev Muhire, Sarah François, Maëlle Deshoux, Penelope Hartnady, Kata Farkas, Simona Kraberger, Denis Filloux, Emmanuel Fernandez, Serge Galzi, Romain Ferdinand, Martine Granier, Armelle Marais, Pablo Monge Blasco, Thierry Candresse, Fernando Escriu, Arvind Varsani, Gordon W Harkins, Darren P Martin, Philippe Roumagnac, "Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa", Virology 493, 142-153
  12. Anisha Dayaram, Mark L Galatowitsch, Gerardo R Argüello-Astorga, Katherine van Bysterveldt, Simona Kraberger, Daisy Stainton, Jon S Harding, Philippe Roumagnac, Darren P Martin, Pierre Lefeuvre, Arvind Varsani, "Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem", Infection, Genetics and Evolution 39, 304-316
  13. Daisy Stainton, Darren P Martin, David A Collings, John E Thomas, Arvind Varsani, "Identification and in silico characterisation of defective molecules associated with isolates of banana bunchy top virus", Archives of Virology 161 (4), 1019-1026
  14. Marcel Tongo, Jeffrey R Dorfman, Darren P Martin, "High Degree of HIV-1 Group M (HIV-1M) Genetic Diversity within Circulating Recombinant Forms: Insight into the Early Events of HIV-1M Evolution", Journal of Virology 90 (5), 2221-2229
  15. Ruth L Amata, Emmanuel Fernandez, Denis Filloux, Darren P Martin, Philippe Rott, Philippe Roumagnac, "Prevalence of Sugarcane yellow leaf virus in Sugarcane-Producing Regions in Kenya Revealed by Reverse-Transcription Loop-Mediated Isothermal Amplification Method", Plant Disease 100 (2), 260-268, 2016
  16. Rafaël Molina, Dominique Didelot, Joël Huat, Stéphane Dupuy, Jérôme Mathey, Anne Puissant, A Puissant, "Apport des images THRS pour la catégorisation des agro-systèmes complexes à Mayotte", Géomatique Expert, 30-37
  17. Mireille Aurélie Harimalala, Alexandre De Bruyn, Frédéric Chiroleu, Murielle Hoareau, Innocent Zinga, Sahondramalala Ranomenjanahary, Virginie Ravigné, Bernard Reynaud, Arvind Varsani, Gordon William Harkins, Darren Patrick Martin, Pierre Lefeuvre, Jean-Michel Lett, "Cassava mosaic disease in Madagascar: complex epidemiology and evolutionary dynamics of cassava mosaic geminiviruses", INRA
  18. Sarah François, Denis Filloux, Philippe Roumagnac, D Bigot, Philippe Gayral, Darren Patrick Martin, Rémi Froissart, Mylène Ogliastro, "Discovery of parvovirus-related sequences in an unexpected broad range of animals", Scientific Reports 6
  19. Issarow CM, Wood R, Mulder N (2016) "Seminal Mycobacterium Tuberculosis in vivo Transmission Studies: Reanalysis Using Probabilistic Modelling" Mycobact Dis 6:217. doi:10.4172/2161-1068.1000217