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Human whole genome and exome sequencing

Developers from H3ABionet together with Brian O'Connor and Michael Crusoe applied best practices from the Broad Institute's Genome Analysis Toolkit (GATK) for human exome and full genome calling into a Common Workflow Language (CWL) pipeline running on Docker containers. The pipeline and documentation are hosted on GitHub here. If you need assistance in getting the pipeline up and running please contact the BST team.