Robust Inference of Positive Selection from Recombining Coding Sequences (Bioinformatics 2006)
Supporting files for "Robust inference of positive selection from recombining coding sequences", Scheffler, Martin and Seoighe, Bioinformatics 2006. The software is available in the HyPhy distribution, and can now be used in conjunction with the GARD recombination detection analysis available in HyPhy. Update 19/01/2007: The script is now available as PARRIS (PARtitioning for Robust Inference of Selection), which supports GARD output, site-specific inference and user-specified nucleotide substitution models. See PARRIS folder.