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Publications 2010

  1. Treurnicht FK, Seoighe C, Martin DP, Wood N, Abrahams MR, Rosa Dde A, Bredell H, Woodman Z, Hide W, Mlisana K, Karim SA, Gray CM, Williamson C, "Adaptive changes in HIV-1 subtype C proteins during early infection are driven by changes in HLA-associated immune pressure", Virology. 2010, 396(2):213-25.
  2. Kanapin AA, Mulder N, Kuznetsov VA, "Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity", BMC Genomics 2010, 11:S4.
  3. Gaujoux R and Seoighe C, "A flexible R package for nonnegative matrix factorization", BMC Bioinformatics 2010, 11:367.
  4. De Wit E, Delport W, Rugamika CE, Meintjes A, Möller M, van Helden PD, Seoighe C, Hoal EG, "Genome-Wide Analysis of the Structure of the South African Coloured Population in the Western Cape", Hum Genetics 2010, 128(2):145-53.
  5. Mulder NJ, "Protein Domain Architectures", Methods in Molecular Biology 2010, 609:83-95.
  6. Lefeuvre P, Martin DP, Harkins G, Lemey P, Gray AJ, Meredith S, Lakay F, Monjane A, Lett JM, Varsani A, Heydarnejad J, "The spread of tomato yellow leaf curl virus from the Middle East to the world", PLoS Pathogens 2010, 6(10):e1001164.
  7. Simon-Loriere E, Martin DP, Weeks KM, Negroni M, "RNA structures facilitate recombination-mediated gene swapping in HIV-1", J Virol. 2010, 84:12675-12682
  8. Hiller NL, Ahmed A, Powell E, Martin DP, Eutsey R, Earl J, Janto B, Boissy RJ, Hogg J, Barbadora K, Sampath R, Lonergan S, Post JC, Hu FZ, Ehrlich GD, "Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection", PLoS Pathogens 2010, 6(9). pii: e1001108.
  9. Prasanna HC, Sinha DP, Verma A, Singh M, Singh B, Rai M, Martin DP, "The population genomics of begomoviruses: global scale population structure and gene flow", Virol J. 2010, 7:220.
  10. Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P, "RDP3: a flexible and fast computer program for analyzing recombination", Bioinformatics 2010, 26:2462-2363
  11. Briddon RW, Martin DP, Owor BE, Donaldson L, Markham PG, Greber RS, Varsani A, "A novel species of mastrevirus (family Geminiviridae) isolated from Digitaria didactyla grass from Australia", Arch Virol. 2010, 155:1529-1534
  12. Briddon RW, Heydarnejad J, Khosrowfar F, Massumi H, Martin DP, Varsani A, "Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran", Virus Res. 2010, 152:169-175