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Publications 2009

  1. Ngandu NK, Seoighe C, Scheffler K, "Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission", Virol J. 2009, 6:164.
  2. Illing N, Klak C, Johnson C, Brito D, Negrao N, Baine F, van Kets V, Ramchurn KR, Seoighe C, Roden L, "Duplication of the Asymmetric Leaves1/Rough Sheath 2/Phantastica (ARP) gene precedes the explosive radiation of the Ruschioideae", Dev Genes Evol. 2009, 219(6):331-8.
  3. Wood N, Bhattacharya T, Keele BF, Giorgi E, Liu M, Gaschen B, Daniels M, Ferrari G, Haynes BF, McMichael A, Shaw GM, Hahn BH, Korber B, Seoighe C, "HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC", PLoS Pathog. 2009, 5(5):e1000414.
  4. Berman P, Collins M, Baumgarten I, Seoighe C, Jennings CL, Joffe Y, Lambert EV, Levitt NS, Faulenbach MV, Kahn SE, Goedecke JH, "Association between the 4 bp proinsulin gene insertion polymorphism (IVS-69) and body composition in black South African women", Obesity (Silver Spring) 2009, 17(6):1298-300
  5. Abrahams MR, Anderson JA, Giorgi EE, Seoighe C, Mlisana K, Ping LH, Athreya GS, Treurnicht FK, Keele BF, Wood N, Salazar-Gonzalez JF, Bhattacharya T, Chu H, Hoffman I, Galvin S, Mapanje C, Kazembe P, Thebus R, Fiscus S, Hide W, Cohen MS, Karim SA, Haynes BF, Shaw GM, Hahn BH, Korber BT, Swanstrom R, Williamson C; CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine Immunology Consortium, "Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants", J Virol. 2009, 83(8):3556-67.
  6. Cross S, Kuttel MM, Stone JE, Gain JE, "Visualisation of cyclic and multi-branched molecules with VMD", J Mol Graph Model. 2009, 28(2):131-9.
  7. Zawaira A, Gallotta M, Beeton-Kempen N, Coulson L, Marais P, Kuttel M,Blackburn J, "Exhaustive computational search of ionic-charge clusters that mediate interactions between mammalian cytochrome P450 (CYP) and P450-oxidoreductase (POR) proteins", Comput Biol Chem. 2010, 34(1):42-52.
  8. Delport W, Scheffler K, Seoighe C, "Models of coding sequence evolution", Brief Bioinform. 2009, 10(1):97-109.
  9. Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJA, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH and Yeats C, "InterPro: the integrative protein signature database", Nucleic Acids Res. 2009, 37(1):D211-215.
  10. Mulder N, Rabiu H, Jamieson G, Vuppu V, "Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis", Infect Genet Evol. 2009, 9(3):314-21