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CBIO open source pipelines for omics data

The Computational Biology division at UCT hosts a range streamlined open-source pipelines built using existing open source tools as well as custom scripts. Although these pipelines are primarily run on the UCT high-performance cluster they are designed with reproducibility and ease of use (Nextflow), version control (GitHub) and portability (Docker and Singularity) in mind. 

CBIO pipelines are available for: